The introduction the game gives to faction armor specificlyspecifically says that your actions while wearing faction armor still count against you, faction. Faction armor only brings your status with a faction to neutral temporarily, it doesn't allow you to negate infamy entirely and boone.
Boone always causes members of the legionLegion to attack on sight.So So if you wear the armor but make booneBoone wait you could more then likely do what you were trying do without gaining infamy but the second you lose the armor, they will attack.