What I mean is the following. If I have two characters, Derp and Herp, and I build a house with Derp on a given planet, will Herp be able to see the house also if they travel to that planet's coordinates?
Yes. In Starbound, there is just 1 universe, and all your characters, and their home planets, exist there. However, going from the home planet of 1 character to the home planet of another will probably take thousands of fuel, so it doesn't really affect gameplay that much. So, in your "Herp" and "Derp" example, it would probably take days for Herp to gather enough fuel to do so.