When doing an Ingress mission waypoint does a ADA Refactor/JARVIS Virus fulfill the "capture or upgrade portal" requirement? Assuming the portal is changed to your faction.
Yes, it does count as a capture for missions. I just did ADA Refactor on on a enlightened portal with level 8 resonators.
Based on my only experience with ADA refactor, I can say that Virus captures do not count towards portal capture. Thus using ADA/Jarvis for a "capture the portal" mission would not be a wise move.