If so we could block the MULEs and scans, etc.
What about other buildings?
I'm assuming it will wipe Protoss shields. That means if you have a double ghost you could throw down a nuke with one and EMP with the other right before the nuke hits.
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Yes, EMP will drain the energy of buildings. It will also do, IIRC, 100 damage to shields, but not necessarily take them out completely.
I have not confirmed, but I have read that it will also reveal cloaked and burrowed units for a period of item as well.