After completing both Commonwealth and Elven Court campaigns, are there any additional missions? It seems like Merlin and the shadowborn still have a part to play in the story.
I've completed both campaigns on normal and nothing...
Currently the campaign ending marks the ending of the shadowborn/Merlin story. But as you've remarked correctly they're leaving some questions unanswered. Specifically questions regarding:
Are all Shadowborn accounted for? What is behind the dark gate?
These will probably be used for either an expansion or a 4th installment of the series.
You can still play random maps or scenarios after the campaigns, but as mentioned above, they do not continue the main story.