I just started playing DXHR for the first time and I went for the Directors Cut version which has the DLC Missing Link segment spliced into it somewhere in the middle.
I got to the Missing Link part and lost all my augs and upgrades because you're supposed to begin that segment with nothing. Anyway, I wasn't a big fan of that (to put it mildly) because I spent a long time maximising my XP in the previous missions and getting those augs in the first place. Now, I've just finished the Missing Link part (really didn't enjoy it compared to the rest of the game but I digress) and my augs haven't come back.
Do I ever get my old aug levels back at any point? Does the standard version of DXHR also take away all your augs at the same point or is it just a product of the Missing Link bit?
I would've preferred a complete return to equilibrium at the end of the Missing Link part. I realise now that I went for the wrong version but it's too late to turn back now!