During this mission, you're sent into a sort of virtual world. You can clear out Reaper code inside the Geth server by shooting it with your weapon.
In the same vein of this question, I'm wondering the following. My OCD-tendencies have me shooting away every last orange cube possible, but in the interest of time (and sanity), can I stick to just clearing out the code that's directly in my path? Will I be at any sort of disadvantage?