I know that capturing enough City States will eventually cause all the remaining city states to enter permanent war against you.
So, what else can cause City States (either collectively or singularly) to enter a state of permanent war with against a main Civ?
This question is triggered by a comment thread linked to my answer to What should I do if a city-state requests my support? so one specific point I'd like covered is does conquering a city-state place you in to a state for permanent war if the city state is ever liberated?